Basic Information
VIS ID
TVIS44015370
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
229873728/229009012 (Hg38)
End
229873728/229009012 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/1536825; hsa-mir-1244-1/Downstream/2353696;
Nearest TSS
ENST00000437798/Upstream/324432; ENST00000465090/Downstream/223073;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/827175, chr2-CpG: 50/Downstream/261980
Nearby gene
PID1(-14961) ;
Upstream sequence
aaaaagcattaaacaattttctaaggcttttcccagttctttcaatttataattctaGTCATTACTGTTCTCTTTGGGCACATGCCTAGAACTGAACTGG
Downstream sequence
AAACATTTGCAATATGATAGAAACAGAGCTTCATAAAGTCAGAATAGAAGATTTAACATTTCCTACATCCAGACCTTCATCTTCCTTGGAACTCTTGCCC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate