Basic Information
VIS ID
TVIS44015380
Fusion event
HTLV-1-LOC100506869 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
59029338/58635556 (Hg38)
End
59029338/58635556 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100506869
Nearest miRNA
hsa-mir-1228/Upstream/810864; hsa-let-7i/Downstream/3624803;
Nearest TSS
ENST00000382841/Upstream/43854; ENST00000548969/Downstream/146160;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/699335, chr12-CpG: 100/Downstream/284222
Upstream sequence
ttagccagactaagaaaaaaagagaagactcaaatatgtaaaatcagaactaaaagtggagccattacaactgataccacaagaatacaatggatcataa
Downstream sequence
gagtctagcatgagcaattatgtgcttataaattggacaacctagaataaattggttaattcctagaaacatacaaactccaagactgaataaaggagaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate