Basic Information
VIS ID
TVIS44015407
Fusion event
HTLV-1-CNTNAP4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
76315487/76281590 (Hg38)
End
76315487/76281590 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNTNAP4
Nearest miRNA
hsa-mir-1225/Upstream/6251168; hsa-mir-11401/Downstream/587346;
Nearest TSS
ENST00000527434/Upstream/3927; ENST00000463177/Downstream/28263;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/46295, chr16-CpG: 34/Downstream/353348
Upstream sequence
CATGGGGATCAAACATAACTTTCACATAATACCTGGTGCTTACTCTAGGAAATAAAGATTATTGTCTTGTAAAATTAATTTTGGAATTTATATCATATGT
Downstream sequence
AAGCAATTTCTGTATTGGAGCTAATGAGTATATCAAGATTAAATTGACTTTTGTTAAAGAAAATAGATTAATAGAATTATATAACATCTATCATAAGATA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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