Basic Information
VIS ID
TVIS44015521
Fusion event
HTLV-1-PIFO integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
111893382/111350760 (Hg38)
End
111893382/111350760 (Hg38)
Orient
+
Location type
Intronic
Target gene
PIFO
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1751793; hsa-mir-11399/Downstream/1111010;
Nearest TSS
ENST00000473358/Upstream/2419; ENST00000493119/Downstream/65919;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3843, chr1-CpG: 68/Downstream/97922
Upstream sequence
aaaactgcctggattcaaatactagctgcagtatttacttgtgtaatcttgagcaaatcttttgacttttctaagcctcagttttttaatctgtaaaatg
Downstream sequence
ggtattaaaatagaatcaatccgataaggttataaagaaaatgtggaaaatcatttaacacagtacttgataacatagtaattgttcaatctgttagcta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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