Basic Information
VIS ID
TVIS44015589
Fusion event
HTLV-1-LINC01031 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
193292418/193323288 (Hg38)
End
193292418/193323288 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA1K
Target gene
LINC01031
Nearest miRNA
hsa-mir-101-1/Upstream/186705; hsa-mir-1182/Downstream/3259125;
Nearest TSS
ENST00000473358/Upstream/18543; ENST00000448412/Downstream/355606;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/201194, chr1-CpG: 24/Downstream/3285290
Upstream sequence
tttcttgcctaattgccctgaccagaacacccagttcaatattacaagacacatgtgacatctttgtcttgttcctgatcttagaaggaaaattttagtc
Downstream sequence
tttgaccagtaagtataacgttggctgtgagtttttatagatgatttatttcaggttgagctagtttccttctattcctagttttttagtattttttttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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