Basic Information
VIS ID
TVIS44015597
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
203239413/203270285 (Hg38)
End
203239413/203270285 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1267049; hsa-mir-1182/Downstream/2178017;
Nearest TSS
ENST00000473358/Upstream/9423; ENST00000433008/Downstream/2524;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/141917, chr1-CpG: 22/Downstream/3106
Nearby gene
LINC01353(No orient, 16867)
Upstream sequence
ccagccaataaatACCTTCTCTGTTTATAAATAGCGTCTTCTCAGATACATAGGCAGCTGTATTGGGTCCCAGTCCAACCTCTTCCCTGTGACATTCAGG
Downstream sequence
CTCTGGTCGTTTACCAAGGATCTTACAGCCCTTTTAACTCAAAAGAGCCATGAAGCTGGCAACCTTCCTTGCTGAGACTAGGTACGAGGATACACCTCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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