VISDB Viral Integration Site DataBase

VIS ID

TVIS44015601

Fusion event

HTLV-1-NFASC integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

204987590/205018462 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-8082 ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6726-5p ; hsa-mir-920 ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-1292-5p ; hsa-mir-6722-3p ; hsa-mir-4327 ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4487 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6798-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-4290 ; hsa-mir-6825-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-5695 ; hsa-mir-342-3p ; hsa-mir-7113-5p ; hsa-mir-1228-3p ; hsa-mir-4640-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-1296-5p ; hsa-mir-2909 ; hsa-mir-4656 ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-4496 ; hsa-mir-140-3p ; hsa-mir-497-3p ; hsa-mir-181b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/3015226; hsa-mir-1182/Downstream/429840;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/36380, chr1-CpG: 32/Downstream/51194

Upstream sequence

AGCCGCAAAGGTATTAGCAATGCTTGCATCATTAATAATCATTCAGTTGAAGGTCAAGCCCATAGACACACACTCTCTGCTGGTAAGAAACCATAGCCCA

Downstream sequence

GAACTGAGCCAATAAGGTTGTTTGAACCTGAGAGTGTGTAATGGTCATTTGGGCCAAGCCTCAGCTAGGGCTGCTGCCTGGACGCCTGAGGGGCAGCTTA