Basic Information
VIS ID
TVIS44015785
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
154054148/153197634 (Hg38)
End
154054148/153197634 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-128-1/Upstream/1829223; hsa-mir-10b/Downstream/5989201;
Nearest TSS
ENST00000437798/Upstream/477467; ENST00000429916/Downstream/4092;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/478595, chr2-CpG: 88/Downstream/280301
Nearby gene
RPRM(-279704) ;
Nearest cancer related gene
RPRM(TSG, -279704) ;
Upstream sequence
gactgggggccagtgccaggccaggcaggcctgttctcaggcgcccagtgctgtgcatgagtgcagactgtcataagcacagtggaccaacacccatgcc
Downstream sequence
ccaggcagtgtgtttgagtggttgtgtggcagtgaaggcaacgcgtggggaaaccctgttttcagcacgtgtgccaaaacacagaggccctcctgcttgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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