Basic Information
VIS ID
TVIS44015789
Fusion event
HTLV-1-LOC105373718 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
161433214/160576703 (Hg38)
End
161433214/160576703 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373718
Nearest miRNA
hsa-mir-128-1/Upstream/168821; hsa-mir-10b/Downstream/8006240;
Nearest TSS
ENST00000437798/Upstream/82909; ENST00000477952/Downstream/560205;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/82843, chr2-CpG: 39/Downstream/583669
Nearby gene
RBMS1(-82896) ;
Upstream sequence
AGGTTTTGATGCTTGAAAGTTTCCCCCAGGTTCAGAATACATATTTTAAAATTTAGAACGGCTTTAACATCTAACAATCGGAAAATGTTTAAGTAAATCA
Downstream sequence
CAGCCCATGCCATGAGATGGAATAATATGCACCCCTTAAAATGATGCAGATGACAAAATGCAATGACTCAGGATAACATTTGTTATGTTAAAAGTCTGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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