Basic Information
VIS ID
TVIS44015793
Fusion event
HTLV-1-LOC105373734 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
169241935/168385425 (Hg38)
End
169241935/168385425 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373734
Nearest miRNA
hsa-mir-128-1/Upstream/7977543; hsa-mir-10b/Downstream/197518;
Nearest TSS
ENST00000437798/Upstream/137284; ENST00000392687/Downstream/70437;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/137481, chr2-CpG: 94/Downstream/70482
Nearby gene
CERS6(+70824) ;
Upstream sequence
gtggtacattcaagagactcacataacacaaaaggactcacataaacttaaggtaaaggagtggaaaaagacatttcatacaaagcgacaccaaaagtgg
Downstream sequence
gtcaggagtagcaattcttgtatcagacaaaacaaactttaaagcaacagcagttaaaaaagacaaagagggacattatataacgataaaaggctttgtc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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