Basic Information
VIS ID
TVIS44015797
Fusion event
HTLV-1-LOC107985961 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
174555919/173691191 (Hg38)
End
174555919/173691191 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
LOC107985961
Nearest miRNA
hsa-mir-128-1/Upstream/5108173; hsa-mir-10b/Downstream/1476442;
Nearest TSS
ENST00000437798/Upstream/332684; ENST00000604994/Downstream/119885;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/335551, chr2-CpG: 54/Downstream/272411
Nearby gene
SP3(-215268) ;
Upstream sequence
CCAAATGCTTCTAGGGGCCAGACGGGTACTAGCAAAGAGGGCAGGCTGGTGAAAGGCAATGGAATGTCTAATGACATTCTACCACATAATTACAAACACT
Downstream sequence
GGGAGtactgagatatttgcagatgaaatgacaggtctgggatttgcctcagagtaatatggggcagggtggaaaggggtagaggggagggagggagggt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate