Basic Information
VIS ID
TVIS44015807
Fusion event
HTLV-1-LOC105373785 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
187301665/186436938 (Hg38)
End
187301665/186436938 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373785
Nearest miRNA
hsa-mir-10b/Upstream/2057894; hsa-mir-1244-1/Downstream/1860554;
Nearest TSS
ENST00000437798/Upstream/80165; ENST00000477672/Downstream/49218;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/697755, chr2-CpG: 87/Downstream/48832
Nearby gene
ZC3H15(+49220) ;
Upstream sequence
gctgacacctggaatacaatgcagcaagctttggacaaaggatgccgcaaaacccatggtgcacctgccccccttgctggcccatagtgtttatgatggg
Downstream sequence
tgaggctggctagtgggggaacatgtagtatccctggcccaggcaccatggtgcatagagtaacactggggtaatacaaatgtgggatgggtacccatca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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