Basic Information
VIS ID
TVIS44015812
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
190788498/189923772 (Hg38)
End
190788498/189923772 (Hg38)
Orient
-
Location type
Intronic
Target gene
C2orf88 ; HNRNPCP2
miRNAs that regulate target gene
hsa-mir-125b-5p
Nearest miRNA
hsa-mir-10b/Upstream/790661; hsa-mir-1244-1/Downstream/16859462;
Nearest TSS
ENST00000437798/Upstream/44145; ENST00000490033/Downstream/138957;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/101493, chr2-CpG: 77/Downstream/256481
Nearby gene
PMS1(+46143) ;
Upstream sequence
GTGACTTTCAACGGGACTATTATGATAGGATGTACAGTTACCCAGCACGTGTACCTCCTCCTCCTCCTATTGCTCGGGCTGTAGTGCCCTCGAAACGTCA
Downstream sequence
GCGTGTATCAGGAAACACTTCACAAAGGGGCATAAGTGGCTTCAATTCTAAGAGTGGACAGCGGGGATCTTCCAAGTCTGGAAAGTTGAAAGGAGATGAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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