Basic Information
VIS ID
TVIS44015843
Fusion event
HTLV-1-UGT1A8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
234535596/233626950 (Hg38)
End
234535596/233626950 (Hg38)
Orient
+
Location type
Intronic
Target gene
UGT1A8
Nearest miRNA
hsa-mir-10b/Upstream/1076377; hsa-mir-149/Downstream/3883981;
Nearest TSS
ENST00000437798/Upstream/9305; ENST00000485022/Downstream/9504;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/59970, chr2-CpG: 42/Downstream/116650
Upstream sequence
tccaatatcaaaagaattttaaaagacagtcccttactggcaatgcattttctgccttcagggacaaagcgttgatggaaccaatccagaaaaagtgttc
Downstream sequence
ttgttgtctaggccttcttgttgtacaaccaaaaaactgtcagtgggtgttgatcttgtcccctcaaggcttaaggtttggcagttctacacatgaggtc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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