Basic Information
VIS ID
TVIS44015857
Fusion event
HTLV-1-D2HGDH integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
242686414/241746999 (Hg38)
End
242686414/241746999 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
D2HGDH
miRNAs that regulate target gene
hsa-mir-34a-5p
Nearest miRNA
hsa-mir-10b/Upstream/269017;
Nearest TSS
ENST00000437798/Upstream/4438; ENST00000496252/Downstream/1831;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/11308, chr2-CpG: 39/Downstream/24223
Upstream sequence
aaaaaCTTTGAATAATTTTTTGTGATGTTTTATAATCAGGCAATTCCATTTTTTCAAGTCTGTGTAGTCTGTGAAAGttttttttagagacaaggtctca
Downstream sequence
ctctgttgcccaagctgaagtgcagtggtgtgatcatagcccctgggttcaagccatcctcttgagtagctgggattacaggtgcacaccaccatgccta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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