Basic Information
VIS ID
TVIS44015860
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
25433888/25211019 (Hg38)
End
25433888/25211019 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/5862514; hsa-mir-10b/Downstream/117621;
Nearest TSS
ENST00000437798/Upstream/6706; ENST00000352271/Downstream/30996;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/6311, chr2-CpG: 47/Downstream/4837
Nearby gene
LINC01381(No orient, 1817)
Upstream sequence
ttccttcagctcctgactgtactggctggttattcctcggttataatagtaaagcacagattaatactaaaactaatgattgataatatccatatataat
Downstream sequence
catctctatatcctatttctagtataacttttcttattctattttctttattatactggaacagtttgtgccttcagtctcttgcttcggcacctgggtg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate