Basic Information
VIS ID
TVIS44015935
Fusion event
HTLV-1-LINC00299 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
8360862/8220732 (Hg38)
End
8360862/8220732 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00299
Nearest miRNA
hsa-mir-7158/Upstream/1570293; hsa-mir-10b/Downstream/1971882;
Nearest TSS
ENST00000437798/Upstream/81330; ENST00000331129/Downstream/57352;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/192576, chr2-CpG: 56/Downstream/236045
Upstream sequence
TCAGTACCCATAAGCTGCCAGAATTACAGTTCCTTCAAGGTGCTGTTTATACCCAGTCTACCTAAACAGGTTCTGTTCAGCTGAGCTTGTTTGGCCCGTG
Downstream sequence
TGCCCTGACTATCTAATTGGCATTTGCCACATCAGAAGTGTGGGAAGTGCTCAGTGGAGGTGAGTGCAGAGCAGTGGCATTTATTTATCCCAACTTGGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate