Basic Information
VIS ID
TVIS44015962
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
102382717/102663873 (Hg38)
End
102382717/102663873 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374016 ; LOC107986106
Nearest miRNA
hsa-let-7g/Upstream/2699475; hsa-mir-12124/Downstream/860160;
Nearest TSS
ENST00000440867/Upstream/228840; ENST00000470756/Downstream/10040;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/813671, chr3-CpG: 32/Downstream/2689812
Nearby gene
ZPLD1(+184032) ;
Upstream sequence
atggccctaaatgagaatttcacatccccattttcccacctgaatgttaccttttggcccatgacaccccctatcctgtgtccataaaaaccccaaactc
Downstream sequence
cactggcagaggaacagagtggcttggcagagaaagagagaagtgtctgaatgtcaagagaagaagaggcagctggacatcagagactatggagaggagt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate