Basic Information
VIS ID
TVIS44015966
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
106357171/106638324 (Hg38)
End
106357171/106638324 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/3114208; hsa-mir-12124/Downstream/2964504;
Nearest TSS
ENST00000440867/Upstream/768772; ENST00000473550/Downstream/491667;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/768950, chr3-CpG: 49/Downstream/602238
Nearby gene
LINC00882(No orient, 471466)
Upstream sequence
caattctcctgcctcagcctcctgagtagctgggattacaggcacccgccaccacacccagataatttttgtgtttttaatagagacaaggtttcaccat
Downstream sequence
gttggccaggctggtcttgaactcctgacctcaggtgatctgcctgcttcagcctcccaaagtgctgggattacaggcatgtgccaccgtgcccagccCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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