Basic Information
VIS ID
TVIS44015988
Fusion event
HTLV-1-CHCHD6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
126573889/126855046 (Hg38)
End
126573889/126855046 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHCHD6
miRNAs that regulate target gene
hsa-mir-296-3p
Nearest miRNA
hsa-let-7g/Upstream/1064494; hsa-mir-12124/Downstream/720220;
Nearest TSS
ENST00000440867/Upstream/182; ENST00000504973/Downstream/80078;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/150280, chr3-CpG: 27/Downstream/94370
Upstream sequence
AGGTAAGGAAAGCCTGCACAAAATCCAGACTCATTTTCAAGGAGGAAGAGACTTATGGACCCTTTTGTCTGCAGTATTTATTTCCTAGATGATTATTCTT
Downstream sequence
GAGCATGGAAATCTCATTTTGTAGGGCTCCTGTGCTTTATAATCCTTCTGAGTAATTGTTCCTCACAGCCACACTGCAAGATCTGAGTGAGGAATATTGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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