Basic Information
VIS ID
TVIS44016037
Fusion event
HTLV-1-LOC105374217 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
171690205/171972415 (Hg38)
End
171690205/171972415 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374217
Nearest miRNA
hsa-let-7g/Upstream/865656; hsa-mir-1224/Downstream/3397125;
Nearest TSS
ENST00000440867/Upstream/71675; ENST00000423424/Downstream/67213;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/161747, chr3-CpG: 140/Downstream/67288
Nearby gene
FNDC3B(+67213) ;
Upstream sequence
AgaggacctactatgtgtcagatattatgccacacactctgcatatctcatctctcatctaaGCAAGGAGATCACCTCCATGGTAAAAGCAGCCATCTCC
Downstream sequence
ATATATAAATTTATCTTTTGAACTTCAGGACAATTTCATCTAACAAACTGCATATGTACCTTTTTGTTATTTTTTTGTATATTATTCGTTTTCCCCCCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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