Basic Information
VIS ID
TVIS44016040
Fusion event
HTLV-1-LINC01208 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.32
Reference genome
GRCh37/hg19
Start
176341939/176624151 (Hg38)
End
176341939/176624151 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01208
Nearest miRNA
hsa-let-7g/Upstream/109000; hsa-mir-1224/Downstream/7262649;
Nearest TSS
ENST00000440867/Upstream/683114; ENST00000617758/Downstream/10306;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2182593, chr3-CpG: 133/Downstream/572298
Upstream sequence
CAGCGTGAGCCAATGAGGCATAAACCAATATTTGCTTAAGGAAGTTGGTGACTTTTGTCTTCCTGAAGAGAGAGGTTGAGAATGATTGGATGTGTTTCCT
Downstream sequence
CTTTCTTCTGTCAAGGTGGACAAAATATCTGGCACATCTTGTGATAAAGATGCAGCAAACatatatatatatatatatatGATcaacaaagtaaggcagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate