Basic Information
VIS ID
TVIS44016061
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
191380167/191662378 (Hg38)
End
191380167/191662378 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1832369; hsa-mir-3137/Downstream/3472128;
Nearest TSS
ENST00000440867/Upstream/93843; ENST00000452657/Downstream/367502;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/332457, chr3-CpG: 24/Downstream/200761
Nearby gene
LINCR-0002(No orient, 72022)
Upstream sequence
actggaaggcccactgccccagggaatgaaggtcctctgagtcagaagccactaaccagatgatccagcagcaggactgagggtgcccgaggcaagcgcc
Downstream sequence
agcccatgccatcaccctcacagagccccgggtatgcttgaccatagaggctaactgtctcctggacactggtgcggccttctcagtcttactctcctgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate