Basic Information
VIS ID
TVIS44016071
Fusion event
HTLV-1-STT3B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p23
Reference genome
GRCh37/hg19
Start
31676293/31634801 (Hg38)
End
31676293/31634801 (Hg38)
Orient
-
Location type
Intronic
Target gene
STT3B
miRNAs that regulate target gene
hsa-mir-15b-5p ; hsa-mir-23a-3p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-12127/Upstream/473014; hsa-let-7g/Downstream/871482;
Nearest TSS
ENST00000440867/Upstream/5550; ENST00000458127/Downstream/29818;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/101011, chr3-CpG: 104/Downstream/345676
Upstream sequence
CTTTTTGGCACATGGTTCACTGCCAGTAGGAGAAAAGCACCCTGAGGGCTATTACACACTTGGATATTCCTGGGGCACATCATAAGATCTCATAGAAAAA
Downstream sequence
GTATCCTGTTAGAATCTGGATGTAATTATAATAAAGAAACTACTAGATCTGGTTTGAATTTTTAAAAATTGTACCCTCTGAAGTTTCTTACTTTGTGCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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