Basic Information
VIS ID
TVIS44016072
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p23
Reference genome
GRCh37/hg19
Start
31689851/31648359 (Hg38)
End
31689851/31648359 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/486572; hsa-let-7g/Downstream/857924;
Nearest TSS
ENST00000440867/Upstream/19108; ENST00000458127/Downstream/16260;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/114569, chr3-CpG: 104/Downstream/332118
Nearby gene
STT3B(+10737) ;
Upstream sequence
cagtagaccatgtatgttctggaacccagcaatgccagggcttgaggcacaagagaagtatggctgctgcttctagggtttaggcatgagcaaccttggg
Downstream sequence
cagtcataccaggtctgaggcatgggtgaggcacaggctaccccagcataagctattgcatgagtgatacacgtgttccccatctgctggcctaggctgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate