Basic Information
VIS ID
TVIS44016087
Fusion event
HTLV-1-CCDC12 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
46994411/46952921 (Hg38)
End
46994411/46952921 (Hg38)
Orient
+
Location type
Intronic
Target gene
CCDC12
miRNAs that regulate target gene
hsa-mir-326
Nearest miRNA
hsa-mir-12127/Upstream/2090940; hsa-let-7g/Downstream/896634;
Nearest TSS
ENST00000440867/Upstream/28762; ENST00000475689/Downstream/23516;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/54113, chr3-CpG: 47/Downstream/23468
Upstream sequence
cacagatgagaaaaatggaagcccaggacaattaagtaacccatccagagtcacacagctagaggttgccaggacgcaaatggcagggcaggcttcaagc
Downstream sequence
ataggctgattccctctagaacccctgccctttgctcttgtcccactcctgtccctACCTTTCACATGCAAATGGTTTCAAGTGTGTCTAGGGTGCCTCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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