Basic Information
VIS ID
TVIS44016122
Fusion event
HTLV-1-LOC107986098 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
73195112/73145961 (Hg38)
End
73195112/73145961 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986098
Nearest miRNA
hsa-let-7g/Upstream/1603872; hsa-mir-12124/Downstream/2068515;
Nearest TSS
ENST00000440867/Upstream/81947; ENST00000608743/Downstream/242185;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/34972, chr3-CpG: 114/Downstream/237627
Nearby gene
PPP4R2(+80101) ;
Upstream sequence
tacctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagccCTTGTGCAGTTTTTCCTTTCTTTTTAGAAATTAACAAAATCAAGTA
Downstream sequence
ACCCTAGAAATGTAACTAGTTTCATATATTTTGTGGTTTTAAAGTTCAAGTATAGTTTATTTTTACCATTTTAAAGACAATTAAATCATTTGACCTTGTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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