Basic Information
VIS ID
TVIS44016127
Fusion event
HTLV-1-LINC02008 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
82039555/81990404 (Hg38)
End
82039555/81990404 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02008
Nearest miRNA
hsa-let-7g/Upstream/2482435; hsa-mir-12124/Downstream/3395306;
Nearest TSS
ENST00000440867/Upstream/4252; ENST00000488348/Downstream/2879171;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/228602, chr3-CpG: 21/Downstream/817429
Upstream sequence
tccaagctccaagtcaaaagcactaggagagaaaactggatctgtaggatccagaggcagatgttaatggcagttaaaaggcacagtgcaggtgattcct
Downstream sequence
gctgactaagccaagcccaagcgtcctgttccacattagtattgatgtcataaatgaggtctagggaactccaaggctactgacagtaggtgagaaagag
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate