Basic Information
VIS ID
TVIS44016129
Fusion event
HTLV-1-LOC101927439 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
83274582/83225431 (Hg38)
End
83274582/83225431 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927439
Nearest miRNA
hsa-let-7g/Upstream/3717462; hsa-mir-12124/Downstream/2160279;
Nearest TSS
ENST00000440867/Upstream/1239279; ENST00000488348/Downstream/1644144;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/417338, chr3-CpG: 48/Downstream/1733702
Nearby gene
LINC00971(No orient, 1412974)
Upstream sequence
GAGGTAAATGGAGATGGGAGGAAGTCAGATTTCTATGTGTACACAATTTAATAAACAATTTTTTGCCACGTTTTTATTAATAGCATATATAAAGGAAGGG
Downstream sequence
TTCTGATTTATAAATACTGTTACAAATTATCTACATATTTAGTTGCTATGTAATGTGACTGAAATGTCATTCCGTGGTAAGGTAAGTGGGAAAAGTTAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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