Basic Information
VIS ID
TVIS44016149
Fusion event
HTLV-1-LOC105377356 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
107525756/106604599 (Hg38)
End
107525756/106604599 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377356
Nearest miRNA
hsa-mir-12113/Upstream/5274185; hsa-mir-1243/Downstream/2884099;
Nearest TSS
ENST00000502981/Upstream/170975; ENST00000508555/Downstream/431213;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/707987, chr4-CpG: 61/Downstream/430799
Nearby gene
GIMD1(No orient, 237164)
Upstream sequence
caccctcccatgcttgctggcacccaaagtccagagggggccgaggtggcagggggctggcatgtcagtgcttccccaagtgcacacacacaggctgggt
Downstream sequence
tgtgacagtgcctgggctcagccataactttcctccaaaactggagtgggttccatgagtggggagaggccaggtagtgggagcaggcccttctgagcct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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