VISDB Viral Integration Site DataBase

VIS ID

TVIS44016155

Fusion event

HTLV-1-FAM241A integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr4

Cytoband

q25

Reference genome

Start

End

113099645/112178489 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-8084 ; hsa-mir-183-3p ; hsa-mir-548c-3p ; hsa-mir-143-5p ; hsa-mir-4762-3p ; hsa-mir-4452 ; hsa-mir-4766-5p ; hsa-mir-3622b-5p ; hsa-mir-6809-5p ; hsa-mir-5000-3p ; hsa-mir-4436a ; hsa-mir-506-5p ; hsa-mir-6512-5p ; hsa-mir-8083 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-4531 ; hsa-mir-7847-3p ; hsa-mir-4764-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-1287-5p ; hsa-mir-3605-5p ; hsa-mir-539-5p ; hsa-mir-764 ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-1265 ; hsa-mir-3914 ; hsa-mir-3977 ; hsa-mir-513b-5p ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-2116-3p ; hsa-mir-302f ; hsa-mir-4445-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-759 ; hsa-mir-548p ; hsa-mir-5586-3p ; hsa-mir-181c-3p ; hsa-mir-3120-3p ; hsa-mir-4646-3p ; hsa-mir-4433b-5p ; hsa-mir-6124 ; hsa-mir-339-5p ; hsa-mir-4275 ; hsa-mir-4272 ; hsa-mir-4496 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-583 ; hsa-mir-3674 ; hsa-mir-135b-3p ; hsa-mir-6505-5p ; hsa-mir-3978 ; hsa-mir-6516-3p ; hsa-mir-4789-5p ; hsa-mir-1206 ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-5093 ; hsa-mir-3121-5p ; hsa-mir-490-5p ; hsa-mir-7845-5p ; hsa-mir-7153-3p ; hsa-mir-4802-3p ; hsa-mir-6776-5p ; hsa-mir-7977 ; hsa-mir-1295a ; hsa-mir-6806-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-92b-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-3653-5p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4684-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-4438 ; hsa-mir-544a ; hsa-mir-891b ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-4742-5p ; hsa-mir-1227-3p ; hsa-mir-1273g-3p ; hsa-mir-1273h-5p ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-3174 ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4785 ; hsa-mir-490-3p ; hsa-mir-6086 ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-7851-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1273f ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-150-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-3664-5p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-378a-5p ; hsa-mir-4639-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-6088 ; hsa-mir-615-5p ; hsa-mir-640 ; hsa-mir-6759-3p ; hsa-mir-6778-3p ; hsa-mir-6794-3p ; hsa-mir-6890-5p ; hsa-mir-7704 ; hsa-mir-8055 ; hsa-mir-8070 ; hsa-mir-93-5p

Nearest miRNA

hsa-mir-12113/Upstream/1317842; hsa-mir-1243/Downstream/469385;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/32266, chr4-CpG: 106/Downstream/52867

Upstream sequence

agggatccagtttcattcttctgcatatgactagccaattaaatagggagtcctcaacaccattaaatagggagtcctttccccattgcttgttttgtct

Downstream sequence

gctttgtcaaagatcaaaatatttacatgtaagacctcagactatcctagaagaaaatctaggaaatacccttctcaacatcggccttggcaaagaattt