Basic Information
VIS ID
TVIS44016170
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.1
Reference genome
GRCh37/hg19
Start
128168098/127246943 (Hg38)
End
128168098/127246943 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724210 ; LOC107986312
Nearest miRNA
hsa-mir-12113/Upstream/1739636; hsa-mir-1305/Downstream/16096517;
Nearest TSS
ENST00000502981/Upstream/140172; ENST00000504491/Downstream/223609;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1929168, chr4-CpG: 86/Downstream/375933
Nearby gene
INTU(+385989) ;
Upstream sequence
CTCTGCATCTGTGCTGGCTTCAGCTGTGTCGTCTCATACTACTTCGTCTTTGGGTGTTGGCTTCTGATCGCTCTGTTGTTCTGCTGGTATCGTaactgtg
Downstream sequence
cctcaaagacttaaagaaaccaatgactaaattcttgagtttgcaggataacggataagaaaagaaacaacttgccaaaatgctaaaactccccctgctt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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