Basic Information
VIS ID
TVIS44016183
Fusion event
HTLV-1-LINC00613 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
136819364/135898209 (Hg38)
End
136819364/135898209 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC00613
Nearest miRNA
hsa-mir-12113/Upstream/10390902; hsa-mir-1305/Downstream/7445251;
Nearest TSS
ENST00000502981/Upstream/10119; ENST00000511749/Downstream/15471;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/953779, chr4-CpG: 24/Downstream/457846
Upstream sequence
GAAGTGGTGTGTTATTTGCTGGTTTTCTTCCTTTCAGTGGGGAAACTAACTAATATGTATGTTTTCAGAGACTGTATTCCACAATAAATATCGTTTTGGG
Downstream sequence
AGATTTTGAGGAAGGAAGTGCCATCCTCACTGTAAGgagtgagttcttagcctgttagttcctgggagagctgattatttaaaaaactctggtacctcct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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