Basic Information
VIS ID
TVIS44016192
Fusion event
HTLV-1-LOC101927636 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
GRCh37/hg19
Start
144870730/143949577 (Hg38)
End
144870730/143949577 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101927636
Nearest miRNA
hsa-mir-12113/Upstream/606042; hsa-mir-1305/Downstream/2459006;
Nearest TSS
ENST00000502981/Upstream/44014; ENST00000568324/Downstream/69710;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/248512, chr4-CpG: 91/Downstream/695513
Upstream sequence
TCATTAAAACAGGTTAAGTGTTTGCAAATCCCAATTACAATAGGTGCCATTAGCTATTAAATCTTAATGATCggccaggcgcagtggctcacacctataa
Downstream sequence
tcccatcattttgggagactgaggcaggcagatcgcctgaggttaggagtttgagaccagtctgaccaacgtggtgaaaccctgtctctactaaaaatac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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