Basic Information
VIS ID
TVIS44016219
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
165408165/164487013 (Hg38)
End
165408165/164487013 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1393385; hsa-mir-1305/Downstream/899229;
Nearest TSS
ENST00000502981/Upstream/102963; ENST00000515485/Downstream/267051;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/102988, chr4-CpG: 38/Downstream/469871
Nearby gene
MIR5684(No orient, 18377)
Upstream sequence
aggaatgcttttacacttggtgggaatgtaaattagttcaaccactgtggaagacagtatggtgattcctcaaagacctagaaccagaaataccatttga
Downstream sequence
cccagcaatcccattactgggtatatacccaaaggaatagcaatcattctattacaaagatacatgtttgcatatgttcattgtagaactattcacaata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate