Basic Information
VIS ID
TVIS44016225
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
172129608/171208457 (Hg38)
End
172129608/171208457 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/22165; hsa-mir-1305/Downstream/2059703;
Nearest TSS
ENST00000502981/Upstream/167849; ENST00000511251/Downstream/89810;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1118105, chr4-CpG: 117/Downstream/604126
Nearby gene
MIR6082(No orient, 22165)
Upstream sequence
ttgtagttttgtttatttatttatactttaagttctgggatacatgttcagaatgtgcaggtttgttacataggtatacgtgtgctgtggtggtttgctg
Downstream sequence
cacctattaacctatcttctaagttccctccactcatctcctacaccccaacaagcccagatgtgtgatgttcccctccctgagtccatctgttctcatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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