Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene186622370186286094186500997186426546186555328186454232
Basic Information
VIS ID
TVIS44016232
Fusion event
HTLV-1-F11-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
187375386/186454232 (Hg38)
End
187375386/186454232 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
F11-AS1
Nearest miRNA
hsa-mir-12113/Upstream/1515792;
Nearest TSS
ENST00000502981/Upstream/27939; ENST00000507644/Downstream/46765;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/18153, chr4-CpG: 21/Downstream/46648
Upstream sequence
atgttaggctataagaagactgtggcctccatcgcgggcactctctgatgttctcttttggtctccttcctgtgggggaggtcggcagccacgccatgag
Downstream sequence
gcagtttctctgaagagacccacagagaaagggctcgatgcttgccaacaaccgtgtgagtatgcttggaggAGTCCTAGTATATATGTTTAACATGACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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