Basic Information
VIS ID
TVIS44016244
Fusion event
HTLV-1-GBA3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
22732488/22730865 (Hg38)
End
22732488/22730865 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
GBA3
Nearest miRNA
hsa-mir-12113/Upstream/215480; hsa-mir-1243/Downstream/1789327;
Nearest TSS
ENST00000502981/Upstream/214811; ENST00000503017/Downstream/266686;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/214440, chr4-CpG: 266/Downstream/1739212
Upstream sequence
aaaaCTTAtgtaatggttaattgtatgtgtcaactttactgagctatgagatgcccacatagctagtaaaatattatttctaagtgtgtctgtgagggtg
Downstream sequence
tttctgaaatagattagcattggaattggtagagtgagtggagaagattactctcatcagtgtgggtgggcatcatctaatcagttggtttgaatagaac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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