Basic Information
VIS ID
TVIS44016265
Fusion event
HTLV-1-LOC105374434 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
43300492/43298475 (Hg38)
End
43300492/43298475 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374434
Nearest miRNA
hsa-mir-12113/Upstream/2796356; hsa-mir-1243/Downstream/4354194;
Nearest TSS
ENST00000502981/Upstream/164608; ENST00000507639/Downstream/194068;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/640942, chr4-CpG: 174/Downstream/1148894
Nearby gene
GRXCR1(+267817) ;
Upstream sequence
ctctgtgtctcacactggcctaggtgctgggaatttagcagtgaataaaaaataaaatttttgccttggtggggctggtatttcagtgAaatcccttatt
Downstream sequence
tgcattgcccttttgagatttaaagagctttctctttctcttcttttccacttactacagttttcatatggggttgttgcgtcaggcattatcaataaca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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