Basic Information
VIS ID
TVIS44016272
Fusion event
HTLV-1-STX18-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.2
Reference genome
GRCh37/hg19
Start
4607340/4605613 (Hg38)
End
4607340/4605613 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
STX18-AS1
Nearest miRNA
hsa-mir-4800/Upstream/2355457; hsa-mir-12113/Downstream/1317662;
Nearest TSS
ENST00000502981/Upstream/63195; ENST00000608184/Downstream/43811;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/29892, chr4-CpG: 41/Downstream/247273
Upstream sequence
ccaagtagctgggaccacaggtgagcgccaccatgctcaatgaatttttttactttttgtagagacaagatcttactatgttgcccaggctggtcttgaa
Downstream sequence
ctcctgaactcaggcaatcctcccacctcagcctcctaaagtgctACCACGTCCAGCAATATCAACATTTTAAGTTTCCACCACAGCCTACCAAAGTGCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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