Basic Information
VIS ID
TVIS44016298
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
61870475/61004757 (Hg38)
End
61870475/61004757 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/82073; hsa-mir-1243/Downstream/5272067;
Nearest TSS
ENST00000502981/Upstream/254171; ENST00000506379/Downstream/138899;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/3808808, chr4-CpG: 222/Downstream/195408
Nearby gene
MIR548AG1(+82073) ;
Upstream sequence
GTGTAGCATTAACTGAGATTATGTGtagattttgaagcaggagcaagaaccttggaactagtgctggattttccctattagctgtgtgacttcaggcaaa
Downstream sequence
ttacttaaccttatctggctcacgtctctcatctgagaggataaggatggaaaactaaggtgccttccagACAAGTGTTTTCTCCTGAGTAACCTCAGTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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