Basic Information
VIS ID
TVIS44016313
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
7147641/7145914 (Hg38)
End
7147641/7145914 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4A
Nearest miRNA
hsa-mir-378d-1/Upstream/1222586; hsa-mir-12113/Downstream/164536;
Nearest TSS
ENST00000502981/Upstream/42529; ENST00000511199/Downstream/46624;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/77239, chr4-CpG: 153/Downstream/46486
Nearby gene
LINC02447(-42538) ;
Upstream sequence
GGGCCGAGTgcctgaccgtctgggtccgaatcctggctatgaccttgggcaacttacctgacctccccaccttggcttacttatctatgaaatgggcatt
Downstream sequence
gcgctgttgagagggttctgtgaattattacttaccagacttagaatggtgcctggcatagagtaggTATCTGTTATTAAGGTTCTCCAGGATCTGCCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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