Basic Information
VIS ID
TVIS44016353
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
101425508/102089804 (Hg38)
End
101425508/102089804 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/1273239; hsa-mir-103a-1/Downstream/8424025;
Nearest TSS
ENST00000502646/Upstream/1186538; ENST00000506058/Downstream/54273;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1186370, chr5-CpG: 26/Downstream/206642
Nearby gene
SLCO4C1(-144184) ;
Upstream sequence
gttgttcaattggtgcccgtgttgggggtacagttagtggagccttctattctgtcatcttgttcctggatttgctgtcatttgtatggggctttgtgat
Downstream sequence
tttatgctctttatttcccttgagggcttaactgatttaagttgggtataatctgttggcttcatttttggatgctttcagagggctgtgtctctgtaca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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