Basic Information
VIS ID
TVIS44016369
Fusion event
HTLV-1-COMMD10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
115717243/116381546 (Hg38)
End
115717243/116381546 (Hg38)
Orient
+
Location type
Intronic
Target gene
COMMD10
miRNAs that regulate target gene
hsa-mir-16-5p
Nearest miRNA
hsa-mir-10397/Upstream/125712; hsa-mir-103a-1/Downstream/2593040;
Nearest TSS
ENST00000502646/Upstream/77412; ENST00000512128/Downstream/66001;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/19654, chr5-CpG: 27/Downstream/65833
Nearby gene
LOC101927190(No orient, 6976)
Upstream sequence
GGAGTCCTCGTTATGTGCAGACTCCAATGTTCTGCCTTGTCTAAGAGAGCTTACATGCGAATGAGTGCAGTGGGAACCCTTAAATCCCCCAGTTCAGGGG
Downstream sequence
TTAGGGACTGAGGCACCAACCTCTCCCTGTTATTCCTGGGCTGTTCTGGTTAGGATTGAGGTGATGTCAACATGGCAGGATTTCTGCACATGACTACAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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