Basic Information
VIS ID
TVIS44016377
Fusion event
HTLV-1-LOC102723654 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
128456308/129120615 (Hg38)
End
128456308/129120615 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102723654
Nearest miRNA
hsa-mir-10397/Upstream/22849; hsa-mir-103a-1/Downstream/276447;
Nearest TSS
ENST00000502646/Upstream/25864; ENST00000505791/Downstream/339650;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/25246, chr5-CpG: 165/Downstream/339195
Nearby gene
ISOC1(+6589) ;
Upstream sequence
atagctagccagacccaagggaaaagccggagtccccagtctttgatgcaaatctgcagccatctgtaatTCTccttattgaccttatctctaatccttt
Downstream sequence
gctccctgtttaccttatccaaggcacactccagcctcttactgttcttgaacatcttgggtacactctgccttaggaccttggcttttgctgtactccc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate