Basic Information
VIS ID
TVIS44016385
Fusion event
HTLV-1-SLC25A48 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
134917938/135582248 (Hg38)
End
134917938/135582248 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
SLC25A48
Nearest miRNA
hsa-mir-10397/Upstream/1356396; hsa-mir-103a-1/Downstream/220737;
Nearest TSS
ENST00000502646/Upstream/2969; ENST00000647391/Downstream/27064;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/3070, chr5-CpG: 70/Downstream/252334
Nearby gene
CXCL14(-2969) ;
Upstream sequence
GGAAACAGGACATCACTCCTTGAGGGAGTGGAAATTTTGCTGAGACCCCAGGGATTTGCTTATTTCTTCTCTTTacatttattgagcacccactgtgtcc
Downstream sequence
caggcgttgtacgaggtgctgggggtttgaggtgagccaaggcagctgtgtgcctgtccccaagcagctcagagtctagtggggaaggcagacattagct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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