Basic Information
VIS ID
TVIS44016398
Fusion event
HTLV-1-LINC01844 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
142137197/142757632 (Hg38)
End
142137197/142757632 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01844
Nearest miRNA
hsa-mir-10397/Upstream/2109706; hsa-mir-103a-1/Downstream/922228;
Nearest TSS
ENST00000502646/Upstream/12032; ENST00000378013/Downstream/12745;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/400217, chr5-CpG: 145/Downstream/12402
Upstream sequence
agacttgaaggaagaaaaataatgtcatgttgatatctatgaaaaaagaattataggcagagaaaacagcaagtgtaaaggccttgagggaagagagtag
Downstream sequence
gtatgccttgtttgaagaatgtcaagaaggccaggtagctgggacagagtgggcagagggagaagggcaggacacgagctgagaagagtatctgtgggtc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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