Basic Information
VIS ID
TVIS44016400
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
145903000/146523437 (Hg38)
End
145903000/146523437 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2843466; hsa-mir-103a-1/Downstream/2538876;
Nearest TSS
ENST00000502646/Upstream/7247; ENST00000512730/Downstream/39789;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/75570, chr5-CpG: 97/Downstream/354346
Nearby gene
GPR151(-7324) ;
Upstream sequence
TTGTAATAAAATAATAATTGCAGCTATGATTTTTGTTACTATGCAATGAAGGGCCCTAGTCAGCCAAAAAGACCCTAGAGAGCTAGTGGGGATTGATTTC
Downstream sequence
CTCCACCAAGAAGATGACATGGTTCCCTAAAAAGGAGTATATTGTTTTAAAAGAACAGAGACTTTTCAGCAAGTAAAGTGCTAAGATACGGGCCCAGGAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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