Basic Information
VIS ID
TVIS44016404
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
149673001/150293438 (Hg38)
End
149673001/150293438 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/560548; hsa-mir-103a-1/Downstream/1228649;
Nearest TSS
ENST00000502646/Upstream/3147; ENST00000643812/Downstream/9515;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/103056, chr5-CpG: 48/Downstream/3977
Nearby gene
ARSI(-2908) ;
Upstream sequence
AGTTGAGGGCTGCAGGATCCAGATAGCAGAGAGATGGCTGGAGAGGCagaagagagaagaagaggagggagaagaggaagaagTCCCCTCTGAAAGTCTT
Downstream sequence
ACACATGAGCACACACACACACCCCTCTGAGCCTTCCAGAGCCTAGCTCAGCGGTGTGGGCACTGCCTCGGACAGGCACCCCCCACCTTCCTGAGGGTAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate