Basic Information
VIS ID
TVIS44016405
Fusion event
HTLV-1-LOC107986464 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
153335183/153955623 (Hg38)
End
153335183/153955623 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986464
Nearest miRNA
hsa-mir-10397/Upstream/2433475; hsa-mir-103a-1/Downstream/391483;
Nearest TSS
ENST00000502646/Upstream/54164; ENST00000520899/Downstream/39684;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2030360, chr5-CpG: 50/Downstream/83000
Nearby gene
FAM114A2(-36086) ;
Upstream sequence
CCAGATATTGGTAAAAAAGATTTGGCAGATTCCAAGCAAGGGAGGGCCAGCTAAAAGTTATTAGACAGGATTTGTATTGATAAGCAATGCAGTCCAACCT
Downstream sequence
GACCCCTTCAGGACATCTAGGCCCCAATAATTCACCCTGTTTTGCCCCTCTTGTTGACTTGATGAGAGGtatattagtttcttgtggtggctataacaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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